Kamino K, Kadakia N, Avgidis F, Liu Z, Aoki K, Shimizu TS, Emonet T Optimal inference of molecular interaction dynamics in FRET microscopy PNAS 120 (15) e2211807120 (2023) (html, PDF, Supp info) |
Kadakia N, Demir M, Michaelis BT, DeAngelis, BD, Reidenbach MA, Clark DA*, Emonet T* Odor motion sensing enhances complex plume navigation Nature doi: 10.1038/s41586-022-05423-4 (2022) (html, PDF, Supp info) *co-corresponding authors
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Sehdev A*, Jayaram V*, Kadakia N, Brown E, Emonet T Novelty detection and multiple timescale integration drive Drosophila orientation dynamics in temporally diverse olfactory environments biorXiv doi:10.1101/2022.09.28.509840 (html) *contributed equally |
Brudner S, Emonet T Navigation: Where is that smell coming from? eLife, 11:e82635 (2022) (html) |
Mattingly H, Emonet T |
Jayaram V*, Kadakia N*, Emonet T Sensing complementary temporal features of odor signals enhances navigation of diverse turbulent plumes eLife, 11:e72415 (2022) (html) * contributed equally |
Mattingly HH*, Kamino K*, Machta BB#, Emonet T#
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Moore JP, Kamino K, Emonet T |
Lin CK, Lee DSW, McKeithen-Mead S, Emonet T, Kazmierczak B. A Primed Subpopulation of Bacteria Enables Rapid Expression of the Type 3 Secretion System in Pseudomonas aeruginosa. mBio 12:e00831-21 (2021) (html , pdf ) |
Kamino K, Keegstra JM, Long J, Emonet T*, Shimizu TS*
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Demir M*, Kadakia N*, Anderson HD, Clark DA, Emonet T
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Schniederberend M, Johnston JF, Shine E, Shen C, Jain R, Emonet T, Kazmierczak BI |
Gorur-Shandilya S, Martelli C, Demir M, Emonet T |
Mattingly HH & Emonet T |
Kadakia N & Emonet T |
Das D, Jülich D, Schwendinger-Schreck J, Guillon E, Lawton AK, Dray N, Emonet T, O’Hern CS, Shattuck MD, Holley SA. |
Fu X*, Kato S*, Long J, Mattingly HH, He C, Vural DC, Zucker SW & Emonet T |
Waite AJ, Frankel NW, Emonet T |
Nesper J*, Hug I*, Kato S*, Hee C-S*, Habazettl JM, Mandredi P, Grzesiek S, Tilman S, Emonet T, Jenal U |
Das D, Chatti D, Emonet T*, Holley SA* |
Gorur-Shandilya S*, Demir M*, Long J, Clark DA1, Emonet T1 |
Long J, Zucker SW, Emonet T |
Waite AJ*, Frankel NW*, Dufour Y*, Johnston JF, Long J and Emonet T See also News and Views: van Vliet S & Ackermann M, Stochastic gene expression: bacterial elites in chemotaxis, Molecular Systems Biology, 13: 909, 1-2 (2017) (html, pdf) |
Raccuglia D, McCurdy LY, Demir M, Gorur-Shandilya S, Kunst M, Emonet T, Nitabach MN Presynaptic GABA receptors mediate temporal contrast enhancement in Drosophila olfactory sensory neurons and modulate odor-driven behavioral kinetics eNeuro in print (2016) DOI: 10.1523/ENEURO.0080-16.2016 (html, pdf ) |
Dufour YS, Gillet S, Frankel NW, Weibel DB, Emonet T |
Frankel N
Trade-offs in Bacterial Chemotaxis and the Adaptation of Non-Genetic Diversity Dissertation (2014) (pdf) |
Frankel N, Pontius W,Dufour Y, Long J,Hernandez-Nunez, Emonet T
Adaptability of non-genetic diversity in bacterial chemotaxis eLife 3:e03526 (2014) (html, pdf, supp. info.) |
Dufour Y, Fu X, Hernandez-Nunez L, Emonet T
Limits of feedback control in bacterial chemotaxis PLoS Comput Biol. 10(6): e1003694 (2014) (Note: There were several typos in the published PDF. Make sure to use this corrected version: pdf, supp. info., html) |
Pontius W, Sneddon MW, Emonet T
Adaptation dynamics in densely clustered chemoreceptors. PLoS Comput Biol. 9(9):e1003230 (2013) (pdf, supp.info., html) |
Mathew D, Martelli C, Kelley-Swift E, Brusalis C, Gershow M, Samuel AD, Emonet T, Carlson JR.
Functional diversity among sensory receptors in a Drosophila olfactory circuit. Proc. Natl. Acad. Sci.,110(23):E2134-43 (2013) (pdf, supplement, data, html) |
Lawton AK, Nandi A, Stulberg MJ, Dray N, Sneddon MW, Pontius W, Emonet T, and Holley SA.
Regulated tissue fluidity steers zebrafish body elongation. Development, 140(3):573-82(2013) (pdf, html, supp. info.) |
Trofka A, Schwendinger-Schreck J, Brend T, Pontius W, Emonet T, and Holley SA.
The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub. Development, 139:940-947(2012) (pdf, html, supp. info.) |
Sneddon MW, Pontius W, Emonet T.
Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria. Proc. Natl. Acad. Sci., 109(3): 805-810 (2012) (pdf, html, supp. info.) |
Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein Byron, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J and Hlavacek WS.
Guidelines for visualizing and annotating rule-based models. Mol. BioSyst., (2011) (pdf, html, supp. info.) |
Emonet T & Altan-Bonnet G,
“Systems Immunology: a primer for Biophysicists”, Section: “Mathematical Modeling of Complex Systems: from genes and molecules to organs and organisms: immune system”, Chapter 9:26 for “Comprehensive Biophysics” (Edited by Edward Egelman)(April 12 2012) (pdf) |
Sliusarenko O, Heinritz J, Emonet T*, Jacobs-Wagner C.*,
High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics. Mol. Micro., 80(3):612–627, May 2011 (pdf, html, supp. info., supp. movies, source code) * Co-corresponding authors |
Su CY, Martelli C, Emonet T, Carlson JR.
Temporal coding of odor mixtures in an olfactory receptor neuron., Proc. Natl. Acad. Sci., 108(12):5075-80 (2011). (pdf, html, supp. info.) |
Sneddon MW, Faeder JR, Emonet T.
Efficient modeling, simulation and coarse-graining of biological complexity with NFsim, Nature Methods, 8:177-183 (2011). (pdf, html, supp. info., supp. video 1, supp. video 2, source code) see also News & Views by Bachman and Sorger Nature Methods, 8:130-131 (2011) (pdf, html) |
Park H, Pontius W, Guet CC, Marko JF, Emonet T, Cluzel P.
Interdependence of behavioural variability and response to small stimuli in bacteria, Nature, 468(7325):819-823 (2010). (pdf, html, supp. info.) |
Feinerman O*, Jentsch G*, Tkach K, Coward JW, Hathorn M, Sneddon MW, Emonet T, Smith KA, Altan-Bonnet G,
Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response, Molecular Systems Biology, 6:437 (2010). (pdf, html, supp. info., SBML model) * Co-first authors |
Llopis PM, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, Emonet T, Jacobs-Wagner C.
Spatial organization of the flow of genetic information in bacteria, Nature, 466(7302):77-81 (2010). (pdf, html, supp. info.) |
Sliusarenko O, Cabeen M, Wolgemuth C, Jacobs-Wagner C, Emonet T.
The processivity of peptidoglycan synthesis provides a built-in mechanism for the robustness of straight-rod cell morphology, Proc. Natl. Acad. Sci., 107(22):10086-91 (2010). (pdf, html, supp. info.) |
Alyahya SA, Alexander R, Costa T, Henriques AO, Emonet T, and Jacobs-Wagner C.,
RodZ, a component of the bacterial core morphogenic apparatus, Proc. Natl. Acad. Sci., 106(4):1239-44 (2009). (pdf, html, supp. info.) |
Emonet T*, Cluzel P.
Relationship between cellular response and behavioral variability in bacterial chemotaxis, Proc. Natl. Acad. Sci., 105(9):3304-9(2008). (pdf, html, supp. info.) * Corresponding author |
Guet C., Bruneaux L., Min T.L., Siegal-Gaskins D., Figueroa I., Emonet T and Cluzel P.
Minimally invasive determination of mRNA concentration in single living bacteria, Nucleic Acids Research, 36(12):1-8 (2008). (pdf, html, supp. info. file 1, supp. info. file 2) |
Le TT, Emonet T, Harlepp S., Guet CC, Cluzel P.
Dynamical determinants of inducible gene expression in a single bacterium Biophysical J., 90(9):3315-21 (2006). (pdf, html, supp. info.) |
Le TT, Harlepp S., Guet CC, Dittmar K, Emonet T, Pan T., Cluzel P.
Real-time RNA profiling within a single bacterium Proc. Natl. Acad. Sci., 102 (26):9160-4 (2005). (pdf, html, supp. info.) |
Emonet T*, Macal CM, North MJ, Wickersham CE, Cluzel P.
AgentCell: a digital single-cell assay for bacterial chemotaxis Bioinformatics, 1; 21(11):2714-21 (2005). (pdf, html, supp. info.) * Corresponding author |
Korobkova E.*, Emonet T.*, Vilar J., Shimizu T. & Cluzel P.
From molecular noise to behavioral variability in a single bacterium Nature, 428, 574-578 (2004). (pdf, html, supp. info.) * co-first authors |
Emonet, T. & Moreno-Insertis, F.
MHS-equilibrium of twisted magnetic tubes Astrophysical Letters & Communications, 34, 9-15 (1996). |