meaninthist

Syntax:

meaninthist(cellList)

meaninthist(cellList1,cellList2,...)

meaninthist(cellList1,cellList2,signal1,signal2,...)

meaninthist(cellList,xarray)

meaninthist(cellList1,cellList2,xarray)

meaninthist(cellList1,normfactor)

meaninthist(cellList1,normfactor1,cellList2,normfactor2)

meaninthist(cellList1,cellList2,'overlap') 

meaninthist(...'nooutput')

meaninthist(...'nodisp')

intlist = meaninthist(cellList)

[intlist1,intlist2] = meaninthist(cellList1,cellList2)

This function plots a histogram of the mean intensity inside every cell in a population, i.e. total intensity divided by the area of the cell. Note, the background has to be subtracted before detecting the signal in MicrobeTracker.

Example

>>% First load the data from two files and assign it to two different variables (here c1 and c2)
>>load('c:\test\example1.mat')
>>c1 = cellList;
>>load('c:\test\example2.mat')
>>c2 = cellList;
>>% Now plot a histogram
>>meaninthist(c1,c2)

Mean intensity inside cells, image units
Processed 2 datasets
Set 1: mean 0.00011441, std 2.5648e-005
Set 1: mean 0.00010174, std 3.2709e-005

>>% Now plot an overlapping-style histogram also using a scaling factor 100
>>meaninthist(c1,c2,100,'overlap')

Mean intensity inside cells, normalized
Processed 2 datasets
Set 1: mean 0.011441, std 0.0025648
Set 1: mean 0.010174, std 0.0032709


Top pages: MicrobeTracker Tools, MicrobeTracker Suite.